Sentieon

GENI also provisions the Sentieon license server. It is enabled per environment through the Sentieon plugin, and is AWS-only.

Point your tasks at the license server

Set SENTIEON_LICENSE to the license server’s hostname and port:

export SENTIEON_LICENSE=licsrvr.sentieon.prod.domain.com.br:8990

In a Nextflow process:

process SENTIEON_BWA {
  container "${params.sentieon_image}"

  script:
  """
  export SENTIEON_LICENSE=${params.sentieon_license}
  sentieon bwa mem -R '@RG\\tID:${sample}\\tSM:${sample}' \\
    ${reference} ${reads} | sentieon util sort -o ${sample}.bam -
  """
}

Docker image

The image needs nothing but the Sentieon program at the version you want.